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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Rnf4, ring finger protein 4
Sequence ID:NM_011278
Entrez Gene ID:19822
Ensembl ID:ENSMUSG00000029110

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5 B2|5

Chromosomal Position (from UCSC)

Chromosomal Position:5: 34336425 - 34353436

NM_011278 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11523467903834679189
1533103468517034685327
3114373468942334689549
4385173469131234691391
5185273469219834692207
5286873469256034692719
6887363469343834693486
73729363469387934696078

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3582133Full LengthBC003282ring finger protein 4
3585769IncompleteBC005551ring finger protein 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035408  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011278 NP_035408 Q9QZS2 zf-C3HC4

Related Sequences

 
mRNAGenPeptSwissProt
U95141 AAC53539 Q9QZS2
AF169300 AAF00620 Q9QZS2
BC003282 AAH03282 Q9QZS2
AK019171 BAB31585 Q9QZS2
AK090162 BAC41119 Q9QZS2
AK145596 BAE26531 Q3ULB8
AK147057 BAE27641 Q9QZS2
AK151116 BAE30125 Q9QZS2
AK158987 BAE34757 Q9QZS2
AK159296 BAE34970 Q3TXE6
AK159778 BAE35362 Q9QZS2
AK159949 BAE35505 Q9QZS2
XM_001475069 XP_001475119  
XM_001475358 XP_001475408  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rnf4 NP_035408 R.norvegicus Rnf4 29274   NP_062055 96
H.sapiens RNF4 6047 Gene Info NP_001171938 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)