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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. S100a9, S100 calcium binding protein A9 (calgranulin B)
Sequence ID:NM_009114
Entrez Gene ID:20202
Ensembl ID:ENSMUSG00000056071

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3 F1-F2|3 43.6 cM

Chromosomal Position (from UCSC)

Chromosomal Position:3: 90692635 - 90695691

NM_009114 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13029049655490496855
3034649049905490499215
4654889049958990499612

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
1332797Full LengthBC027635S100 calcium binding protein A9 (calgranulin B)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033140  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009114 NP_033140 P31725
Q3UP42
efhand
S_100

Related Sequences

 
mRNAGenPeptSwissProt
M83219 AAB07228 P31725
Q3UP42
BC027635 AAH27635 P31725
Q3UP42
AK143826 BAE25555 P31725
Q3UP42

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus S100a9 NP_033140 R.norvegicus S100a9 94195   NP_446039 78
H.sapiens S100A9 6280 Gene Info NP_002956 60

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)