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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Chmp5, Charged multivesicular body protein 5
Sequence ID:NM_029814
Entrez Gene ID:76959
Ensembl ID:ENSMUSG00000028419

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4 A5|4

Chromosomal Position (from UCSC)

Chromosomal Position:4: 40948552 - 40965302

NM_029814 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11244089558540895708
1252294089648640896590
2302764089754640897592
2773704089940040899493
3714424090001440900085
4435514090592240906030
5526644090789140908003
66513724091162740912334

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2811290Full LengthBC006947chromatin modifying protein 5
6493295IncompleteBC058756chromatin modifying protein 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_084090  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_029814 NP_084090 Q9D7S9 ESCRT-III

Related Sequences

 
mRNAGenPeptSwissProt
BC006947 AAH06947 Q9D7S9
AK008911 BAB25962 Q9D7S9
AK147058 BAE27642 Q9D7S9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Chmp5 NP_084090 R.norvegicus Chmp5 297995   NP_001020581 100
H.sapiens CHMP5 51510 Gene Info NP_057494 99
A.gambiae AgaP_AGAP005100 1274775   XP_313976 64
D.melanogaster CG6259 39964   NP_648997 64
C.elegans F41E6.9 179242   NP_505219 61
A.thaliana VPS60.1 820233   NP_187675 50
A.thaliana VPS60.2 830364   NP_568143 49
N.crassa NCU04541 3872131   XP_955981 49
S.pombe SPCC162.06c 2538774   NP_588238 44
S.cerevisiae VPS60 852097   NP_010774 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)