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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Yipf6, Yip1 domain family, member 6
Sequence ID:NM_207633
Entrez Gene ID:77929
Ensembl ID:ENSMUSG00000047694

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:X|X C2

Chromosomal Position (from UCSC)

Chromosomal Position:X: 98938206 - 98944035

NM_207633 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
15089613311996133626
5096379613511196135239
6387169613546096135538
7177599613612596136167
7608889613811696138244
88910469613881696138973
104751949614021196144358

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6328657Full LengthBC048712Yip1 domain family, member 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_997516  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_207633 NP_997516 Q8BR70 Yip1

Related Sequences

 
mRNAGenPeptSwissProt
BC048712 AAH48712 Q8BR70
AK045453 BAC32377 Q8BR70
AK079683 BAC37722 Q8BR70
AK143152 BAE25283 Q8BR70

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Yipf6 NP_997516 R.norvegicus Yipf6 363476   NP_001020918 93
H.sapiens YIPF6 286451 Gene Info NP_776195 84
A.gambiae AgaP_AGAP008226 1277753   XP_317244 59
C.elegans W02D9.2 173123   NP_493177 54
D.melanogaster CG3652 33643   NP_608828 54
S.pombe SPAC644.13c 2543575   NP_593881 46
A.thaliana AT2G18840 816399   NP_565442 43
A.thaliana AT4G30260 829149   NP_567843 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)