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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Tra2b, transformer 2 beta homolog (Drosophila)
Sequence ID:NM_009186
Entrez Gene ID:20462
Ensembl ID:ENSMUSG00000022858

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16 B1|16 14.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:16: 22245740 - 22265929

NM_009186 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
111262224581322246938
112712002224726222247335
120112602224850822248567
126113442224912222249205
134514602225093722251052
146116492225267922252867
165018122225448022254642
181319462225505622255189
194721352226581322266001

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6594226Full LengthBC061177splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila)
6828358Full LengthBC086795splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila)
5343672IncompleteBC057996splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033212  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009186 NP_033212 P62996 RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
BC061177 AAH61177 P62996
BC086795 AAH86795 Q5PR75
AK049573 BAC33819 P62996
AK077418 BAC36791 P62996
AK080378 BAC37898 P62996
X80232 CAA56518 P62996

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tra2b NP_033212 H.sapiens TRA2B 6434 Gene Info NP_004584 100
R.norvegicus Tra2b 117259   NP_476460 100
D.melanogaster tra2 36619   NP_995834 51
C.elegans rsp-8 176613   NP_499533 49
A.thaliana AT4G35785 829732   NP_680768 41
N.crassa NCU04164 3876870   XP_960722 40
P.falciparum PF10_0028 810186   XP_001347313 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)