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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ocrl, oculocerebrorenal syndrome of Lowe
Sequence ID:NM_177215
Entrez Gene ID:320634
Ensembl ID:ENSMUSG00000001173

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, synovium, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:X A4|X

Chromosomal Position (from UCSC)

Chromosomal Position:X: 47912466 - 47915582

 Exon Info From UCSC:
NM_177215

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30533468Full LengthBC068146oculocerebrorenal syndrome of Lowe
5367818IncompleteBC043709oculocerebrorenal syndrome of Lowe

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_796189  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_177215 NP_796189 Q6NVF0 RhoGAP
Exo_endo_phos

Related Sequences

 
mRNAGenPeptSwissProt
BC043709 AAH43709 Q80XM6
BC054840 AAH54840 Q7TPR1
BC068146 AAH68146 Q6NVF0
AK044320 BAC31865 Q8BXT3
AK047906 BAC33188 Q8BXC9
AK041963 BAE20614 Q6NVF0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ocrl NP_796189 R.norvegicus Ocrl 317576   NP_001101726 94
H.sapiens OCRL 4952 Gene Info NP_000267 92
A.gambiae AgaP_AGAP010556 3291116   XP_558090 37
D.melanogaster CG3573 31157   NP_569962 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)