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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Acsl1, acyl-CoA synthetase long-chain family member 1
Sequence ID:NM_007981
Entrez Gene ID:14081
Ensembl ID:ENSMUSG00000018796

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8|8 B2

Chromosomal Position (from UCSC)

Chromosomal Position:8: 46471181 - 46535146

 Exon Info From UCSC:
NM_007981

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5098645Full LengthBC056644acyl-CoA synthetase long-chain family member 1
3582717IncompleteBC006692acyl-CoA synthetase long-chain family member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032007  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_007981 NP_032007 P41216 EC 6.2.1.3 AMP-binding

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U15977 AAA52193 P41216 EC 6.2.1.3
BC056644 AAH56644 P41216 EC 6.2.1.3
AK004897 BAB23652 P41216 EC 6.2.1.3
AK145900 BAE26736 P41216 EC 6.2.1.3
AK149406 BAE28854 P41216 EC 6.2.1.3
AK152772 BAE31484 P41216 EC 6.2.1.3
AK153050 BAE31678 P41216 EC 6.2.1.3
AK161189 BAE36230 P41216 EC 6.2.1.3
AK168078 BAE40051 P41216 EC 6.2.1.3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Acsl1 NP_032007 R.norvegicus Acsl1 25288   NP_036952 95
H.sapiens ACSL1 2180 Gene Info NP_001986 85

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)