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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cxcl1, chemokine (C-X-C motif) ligand 1
Sequence ID:NM_008176
Entrez Gene ID:14825
Ensembl ID:ENSMUSG00000029380

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5 E-F|5 51.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:5: 90892655 - 90893110

NM_008176 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11369132027091320405
1372609132049591320618
2613419132073491320814
3429479132153391322138

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40130779Full LengthBC132502chemokine (C-X-C motif) ligand 1
40130781Full LengthBC132504chemokine (C-X-C motif) ligand 1
5321155IncompleteBC037997chemokine (C-X-C motif) ligand 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032202  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008176 NP_032202 P12850 IL8

Related Sequences

 
mRNAGenPeptSwissProt
J04596 AAA40131 P12850
BC037997 AAH37997 Q5U5W9
BC132502 AAI32503 A2RTH0
BC132504 AAI32505 A2RTH0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cxcl1 NP_032202 R.norvegicus Cxcl1 81503   NP_110472 89
H.sapiens CXCL2 2920 Gene Info NP_002080 70

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)