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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Col11a1, collagen, type XI, alpha 1
Sequence ID:NM_007729
Entrez Gene ID:12814
Ensembl ID:ENSMUSG00000027966

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3 F3|3 53.1 cM

Chromosomal Position (from UCSC)

Chromosomal Position:3: 114060441 - 114061410

 Exon Info From UCSC:
NM_007729

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6393164Full LengthBC052161collagen, type XI, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031755  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007729 NP_031755 Q61245 Collagen
COLFI
Laminin_G_2

Related Sequences

 
mRNAGenPeptSwissProt
S74574 AAB33439 Q61245
BC052161 AAH52161 Q61245
D38162 BAA07367 Q61245
AK052979 BAC35228 Q8C6X0
AK081304 BAC38190 Q8C4S5
AK140136 BAE24251 Q3UST0
AK161206 BAE36240 Q3TTT4
AK161815 BAE36589 Q3TST6
X91014 CAA62496 Q61246

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col11a1 NP_031755 R.norvegicus Col11a1 25654   XP_342326 97
H.sapiens COL11A1 1301 Gene Info NP_542196 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)