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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sphk1, sphingosine kinase 1
Sequence ID:NM_001172472
NM_001172473
NM_001172475
NM_011451
NM_025367
Entrez Gene ID:20698
Ensembl ID:ENSMUSG00000061878

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11 E2|11

Chromosomal Position (from UCSC)

Chromosomal Position:11: 116531910 - 116536670

 Exon Info From UCSC:
NM_001172472
NM_001172473
NM_001172475
NM_011451
NM_025367

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4221357Full LengthBC037710sphingosine kinase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035581  NP_079643  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001172472 NP_001165943      
NM_001172473 NP_001165944      
NM_001172475 NP_001165946      
NM_011451 NP_035581     DAGK_cat
NM_025367 NP_079643 Q8CI15 EC 2.7.1.91 DAGK_cat

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF068748 AAC61697 O88885  
AF068749 AAC61698 Q8CI15 EC 2.7.1.91
BC037710 AAH37710 Q8CI15 EC 2.7.1.91
AF415213 AAL07499 Q8CI15 EC 2.7.1.91
AK136289 BAE22918 Q3UWJ7  
AK155332 BAE33198 Q8CI15 EC 2.7.1.91
AK160900 BAE36079 Q8CI15 EC 2.7.1.91

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sphk1 NP_001165943 R.norvegicus Sphk1 170897   NP_596877 90
H.sapiens SPHK1 8877 Gene Info NP_892010 81
A.thaliana SPHK1 828239   NP_193885 38
A.thaliana AT4G21534 10723114   NP_001190787 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta