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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Hspa9, heat shock protein 9
Sequence ID:NM_010481
Entrez Gene ID:15526
Ensembl ID:ENSMUSG00000024359

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:18 C|18 15.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:18: 34938120 - 34954282

 Exon Info From UCSC:
NM_010481

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6813991Full LengthBC052727heat shock protein 9
6813991Full LengthBC057343heat shock protein 9

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034611  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_010481 NP_034611 P38647 HSP70

Related Sequences

 
mRNAGenPeptSwissProt
BC052727 AAH52727 P38647
BC057343 AAH57343 P38647
D11089 BAA01862 P38647
D17556 BAA04493 P38647
AK002634 BAB22248 P38647
AK004946 BAB23690 P38647
AK133501 BAE21690 P38647
AK137109 BAE23238 P38647
AK145965 BAE26790 P38647
AK159791 BAE35373 P38647
AK165958 BAE38486 P38647
AK167856 BAE39874 P38647

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Hspa9 NP_034611 R.norvegicus Hspa9 291671   NP_001094128 99
H.sapiens HSPA9 3313 Gene Info NP_004125 98
A.gambiae AgaP_AGAP010876 1271080   XP_309825 81
D.melanogaster Hsc70-5 36583   NP_523741 78
C.elegans hsp-6 178873   NP_504291 77
N.crassa NCU08693 3877901   XP_961753 67
S.cerevisiae SSC1 853503   NP_012579 66
S.pombe ssc1 2543026   NP_593459 64
P.falciparum PF11_0351 810898   XP_001348022 64
A.thaliana MTHSC70-2 830818   NP_196521 63

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)