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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ap3d1, Adaptor-related protein complex 3, delta 1 subunit
Sequence ID:NM_007460
Entrez Gene ID:11776
Ensembl ID:ENSMUSG00000020198

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:10 C1|10 43.0

Chromosomal Position (from UCSC)

Chromosomal Position:10: 80706977 - 80742211

 Exon Info From UCSC:
NM_007460

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5704929Full LengthBC053066adaptor-related protein complex 3, delta 1 subunit
6489789Full LengthBC048786adaptor-related protein complex 3, delta 1 subunit
3986599IncompleteBC022171adaptor-related protein complex 3, delta 1 subunit
4458334IncompleteBC037477adaptor-related protein complex 3, delta 1 subunit

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031486  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007460 NP_031486 O54774 Adaptin_N
BLVR

Related Sequences

 
mRNAGenPeptSwissProt
BC022171 AAH22171 Q05CQ3
BC037477 AAH37477 Q8CGH7
BC048786 AAH48786 O54774
BC053066 AAH53066 O54774
AF469670 AAO40831 Q80UA6
AB004305 BAA24578 O54774
AK141789 BAE24834 Q3UR54
AK155518 BAE33305 Q3U237
AK155825 BAE33449 Q3U1P6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ap3d1 NP_031486 R.norvegicus Ap3d1 314633   NP_001094189 98
H.sapiens AP3D1 8943 Gene Info NP_003929 91
A.gambiae AgaP_AGAP000161 1272102   XP_310978 65
D.melanogaster g 44819   NP_524785 60
C.elegans apd-3 173701   NP_494570 49
S.pombe apl5 2542857   NP_594667 44
A.thaliana delta-ADR 841298   NP_849785 37
N.crassa NCU04652 3875333   XP_959195 36
S.cerevisiae APL5 855906   NP_015129 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)