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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sec23a, SEC23A (S. cerevisiae)
Sequence ID:NM_009147
Entrez Gene ID:20334
Ensembl ID:ENSMUSG00000020986

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12 C1|12

Chromosomal Position (from UCSC)

Chromosomal Position:12: 58958790 - 59011900

 Exon Info From UCSC:
NM_009147

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5364796Full LengthBC034610SEC23A (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033173  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009147 NP_033173 Q01405 Gelsolin
zf-Sec23_Sec24
Sec23_trunk
Sec23_helical
Sec23_BS

Related Sequences

 
mRNAGenPeptSwissProt
BC034610 AAH34610 Q01405
AY082671 AAL92480 Q01405
AK028152 BAC25779 Q8C1E4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sec23a NP_033173 R.norvegicus Sec23a 58817   NP_001099202 100
H.sapiens SEC23A 10484 Gene Info NP_006355 99
A.gambiae AgaP_AGAP001759 1281416   XP_321324 75
D.melanogaster sec23 40694   NP_730978 75
C.elegans sec-23 180317   NP_507877 61
N.crassa NCU01318 3877564   XP_961404 59
S.pombe sec231 2538699   NP_587900 57
S.cerevisiae SEC23 856311   NP_015507 51
A.thaliana AT3G23660 821946   NP_001189956 50
A.thaliana AT1G05520 837054   NP_563741 49
P.falciparum Pfsec23 2655487   XP_001349299 49
A.thaliana AT4G14160 827055   NP_193152 48

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)