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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Kdm4c, lysine (K)-specific demethylase 4C
Sequence ID:NM_001172095
NM_144787
Entrez Gene ID:76804
Ensembl ID:ENSMUSG00000028397

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 C3|4

Chromosomal Position (from UCSC)

Chromosomal Position:4: 74252003 - 74333761

 Exon Info From UCSC:
NM_001172095
NM_144787

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4923943Full LengthBC020180jumonji domain containing 2C
5357211Full LengthBC042424jumonji domain containing 2C
30466504IncompleteBC066789jumonji domain containing 2C

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_659036  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001172095 NP_001165566    
NM_144787 NP_659036 Q8VCD7 JmjC
JmjN

Related Sequences

 
mRNAGenPeptSwissProt
BC020180 AAH20180 Q8VCD7
BC042424 AAH42424 Q8VCD7
AK042792 BAC31369 Q8BXY9
AK053104 BAC35267 Q8VCD7
AK081769 BAC38327 Q8VCD7
Q3UMI0
AK173023 BAD32301 Q8VCD7
AK144103 BAE25700 Q8VCD7
AK144890 BAE26118 Q3UMI0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Kdm4c NP_001165566 R.norvegicus Kdm4c 298144   XP_216426 94
H.sapiens KDM4C 23081 Gene Info NP_055876 85
D.melanogaster Kdm4B 318918   NP_001163139 67
A.gambiae AgaP_AGAP011180 1270747   XP_309467 67
D.melanogaster seq 3772396   NP_001163137 67

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)