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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Vipar, VPS33B interacting protein, apical-basolateral polarity regulator
Sequence ID:NM_001142580
NM_134044
NM_001142581
Entrez Gene ID:104799
Ensembl ID:ENSMUSG00000021038

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12 D2|12

Chromosomal Position (from UCSC)

Chromosomal Position:12: 87248529 - 87266253

 Exon Info From UCSC:
NM_001142580
NM_134044
NM_001142581

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2651233Full LengthBC016646expressed sequence AI413782
5346489Full LengthBC023716expressed sequence AI413782

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001142580 NP_001136052 Q8BGQ1  
NM_001142581 NP_001136053    
NM_134044 NP_598805    

Related Sequences

 
mRNAGenPeptSwissProt
BC016646 AAH16646 Q8BGQ1
BC023716 AAH23716 Q8BGQ1
AK046322 BAC32680 Q8BGQ1
AK049643 BAC33854 Q8BGQ1
AK079055 BAC37516 Q8BGQ1
AK082261 BAC38449 Q8BGQ1
AK145043 BAE26203 Q3UM95

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Vipar NP_598805 H.sapiens C14orf133 63894 Gene Info NP_001180243 96
A.gambiae AgaP_AGAP001233 1281938   XP_321923 30
D.melanogaster Vps16B 43521   NP_651731 29
C.elegans spe-39 179071   NP_504718 26

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)