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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Tln1, talin 1
Sequence ID:NM_011602
Entrez Gene ID:21894
Ensembl ID:ENSMUSG00000028465

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4 B1|4

Chromosomal Position (from UCSC)

Chromosomal Position:4: 43559351 - 43562583

 Exon Info From UCSC:
NM_011602

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9087721Full LengthBC150810talin 1
3707563IncompleteBC018557talin 1
5318644IncompleteBC055348talin 1
6433095IncompleteBC050080talin 1
6742020IncompleteBC059711talin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035732  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011602 NP_035732 P26039 Band_41
I_LWEQ

Related Sequences

 
mRNAGenPeptSwissProt
BC018557 AAH18557 P26039
BC121787 AAI21788 Q0V930
BC150810 AAI50811 P26039
AK040128 BAC30516 Q8C9Z8
AK122420 BAC65702 Q80TM2
AK147228 BAE27781 Q3UHS6
AK170630 BAE41923 Q3TBC3
AK171322 BAE42391 Q3TBC3
X56123 CAA39588 P26039

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tln1 NP_035732 H.sapiens TLN1 7094 Gene Info NP_006280 99
R.norvegicus Tln1 313494   NP_001034114 99

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta