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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Pef1, penta-EF hand domain containing 1
Sequence ID:NM_026441
Entrez Gene ID:67898
Ensembl ID:ENSMUSG00000028779

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4|4 D3

Chromosomal Position (from UCSC)

Chromosomal Position:4: 130107614 - 130128116

NM_026441 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
195129784799129784893
96369129798411129798684
370525129802306129802461
526669129802897129803040
6701551129804496129805377

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5029503Full LengthBC019191penta-EF hand domain containing 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_080717  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_026441 NP_080717 Q8BFY6 efhand

Related Sequences

 
mRNAGenPeptSwissProt
BC019191 AAH19191 Q8BFY6
AK007394 BAB25010 Q8BFY6
AK013238 BAB28735 Q8BFY6
AK046247 BAC32654 Q8BFY6
AK075978 BAC36091 Q8BFY6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Pef1 NP_080717 R.norvegicus Pef1 297900   NP_001007652 94
H.sapiens PEF1 553115 Gene Info NP_036524 87
D.melanogaster CG17765 36111   NP_610592 46
A.gambiae AgaP_AGAP006246 1276905   XP_316312 42
A.thaliana AT5G04170 830295   NP_196037 40
A.thaliana AT3G10300 820192   NP_187641 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)