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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Tcea1, transcription elongation factor A (SII) 1
Sequence ID:NM_001159750
NM_001159751
NM_011541
Entrez Gene ID:21399
Ensembl ID:ENSMUSG00000033813

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, peripheral nervous system, placenta, pooled tissue, retina, salivary gland, skin, soft tissue, spleen, stem cell, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1 A1|1

Chromosomal Position (from UCSC)

Chromosomal Position:1: 4857266 - 4858363

 Exon Info From UCSC:
NM_001159750
NM_001159751
NM_011541

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2582185Full LengthBC061490transcription elongation factor A (SII) 1
3590733Full LengthBC006022transcription elongation factor A (SII) 1
6390364Full LengthBC083127transcription elongation factor A (SII) 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035671  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001159750 NP_001153222    
NM_001159751 NP_001153223    
NM_011541 NP_035671 Q3UWX7
P10711
TFIIS_C
TFIIS_M

Related Sequences

 
mRNAGenPeptSwissProt
M18209 AAA40418 P10711
M18210 AAA40419 Q3UWX7
P10711
BC006022 AAH06022 Q3UWX7
P10711
BC061490 AAH61490 Q3UWX7
P10711
BC083127 AAH83127 Q3UWX7
P10711
AK136035 BAE22787 Q3UWX7
P10711
AK143593 BAE25455 Q3UPE0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tcea1 NP_035671 H.sapiens TCEA1 6917 Gene Info NP_006747 97
C.elegans T24H10.1 174450   NP_495941 49
S.pombe tfs1 2541941   NP_593623 36
S.cerevisiae DST1 852839   NP_011472 35
N.crassa NCU02563 3881812   XP_965694 30

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)