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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Mm. Vsx1, visual system homeobox 1 homolog (zebrafish)
Sequence ID:NM_054068
Entrez Gene ID:114889
Ensembl ID:ENSMUSG00000033080

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

Cytogenetic Location (from UniGene)

Cytogenetic Location:2 G3|2 83.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 150681631 - 150688982

NM_054068 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4511665Full LengthBC057647visual system homeobox 1 homolog (zebrafish)
8861476Full LengthBC138456visual system homeobox 1 homolog (zebrafish)
8861480Full LengthBC138460visual system homeobox 1 homolog (zebrafish)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_473409  

Protein Infomation

NM_054068 NP_473409 Q91V10 Homeobox

Related Sequences

BC057647 AAH57647 Q91V10
BC138456 AAI38457 A2AQX5
BC138460 AAI38461 A2AQX5
AF395732 AAL08947 Q91V10
AF391758 AAL09585 Q91V10
AY056825 AAL11431 Q91V10
AK157311 BAE34043 Q3U013

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
M.musculus Vsx1 NP_473409 R.norvegicus Vsx1 689704   NP_001103016 92
H.sapiens VSX1 30813 Gene Info NP_055403 77

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)