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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Vsx1, visual system homeobox 1 homolog (zebrafish)
Sequence ID:NM_054068
Entrez Gene ID:114889
Ensembl ID:ENSMUSG00000033080

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 G3|2 83.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 150681631 - 150688982

NM_054068 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
142576150506439150509001
25772754150510146150510323
27552878150511329150511452
28792957150511883150511961
29583579150514251150514872

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4511665Full LengthBC057647visual system homeobox 1 homolog (zebrafish)
8861476Full LengthBC138456visual system homeobox 1 homolog (zebrafish)
8861480Full LengthBC138460visual system homeobox 1 homolog (zebrafish)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_473409  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_054068 NP_473409 Q91V10 Homeobox

Related Sequences

 
mRNAGenPeptSwissProt
BC057647 AAH57647 Q91V10
BC138456 AAI38457 A2AQX5
BC138460 AAI38461 A2AQX5
AF395732 AAL08947 Q91V10
AF391758 AAL09585 Q91V10
AY056825 AAL11431 Q91V10
AK157311 BAE34043 Q3U013

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Vsx1 NP_473409 R.norvegicus Vsx1 689704   NP_001103016 92
H.sapiens VSX1 30813 Gene Info NP_055403 77

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)