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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Hmgb1, high mobility group box 1
Sequence ID:NM_010439
Entrez Gene ID:15289
Ensembl ID:ENSMUSG00000066551

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5 G3|5 83.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:5: 149047231 - 149048685

NM_010439 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
191704149858803149860488
17051879149861302149861476
18802025149861870149862015
20262189149862163149862326
21902327149864475149864612

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3586745Full LengthBC008565high mobility group box 1
3587109Full LengthBC006586high mobility group box 1
4215684Full LengthBC111468high mobility group box 1
4952464Full LengthBC094030high mobility group box 1
4987137Full LengthBC091741high mobility group box 1
5036554Full LengthBC110667high mobility group box 1
5372544Full LengthBC083067high mobility group box 1
6485915Full LengthBC085090high mobility group box 1
30019980Full LengthBC064790high mobility group box 1
30849071Full LengthBC100312high mobility group box 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034569  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_010439 NP_034569 Q58EV5
P63158
HMG_box

Related Sequences

 
mRNAGenPeptSwissProt
U00431 AAA20508 Q58EV5
P63158
L38477 AAA57042 P63158
BC006586 AAH06586 Q58EV5
P63158
BC008565 AAH08565 Q58EV5
P63158
BC064790 AAH64790 Q6P202
BC083067 AAH83067 Q58EV5
P63158
BC085090 AAH85090 Q58EV5
P63158
BC091741 AAH91741 Q58EV5
P63158
BC094030 AAH94030 Q58EV5
P63158
BC100312 AAI00313 Q497Z6
BC110667 AAI10668 Q58EV5
BC111468 AAI11469 Q58EV5
AK037928 BAC29902 Q58EV5
P63158
AK050659 BAC34367 Q8C7C4
AK051800 BAC34773 Q8BQ02
AK082902 BAC38678 Q8BNM0
AK084841 BAC39289 Q58EV5
P63158
AK146420 BAE27155 Q3UJK0
AK150924 BAE29962 Q3UBK2
AK157846 BAE34226 Q58EV5
P63158
Z11997 CAA78042 Q58EV5
P63158

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Hmgb1 NP_034569 H.sapiens HMGB1 3146 Gene Info NP_002119 99
R.norvegicus LOC690940 690940   XP_001076232 98
R.norvegicus LOC689398 689398   XP_001068941 98
A.gambiae AgaP_AGAP000005 1272270   XP_311155 51
D.melanogaster Dsp1 117294   NP_996485 48
C.elegans hmg-1.2 175890   NP_498375 45

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta