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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Smc4, structural maintenance of chromosomes 4
Sequence ID:NM_133786
Entrez Gene ID:70099
Ensembl ID:ENSMUSG00000034349

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3|3 E2

Chromosomal Position (from UCSC)

Chromosomal Position:3: 69006080 - 69034526

 Exon Info From UCSC:
NM_133786

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6512832Full LengthBC061481structural maintenance of chromosomes 4
6841276Full LengthBC062939structural maintenance of chromosomes 4
3589989IncompleteBC002078SMC4 structural maintenance of chromosomes 4-like 1 (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_598547  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_133786 NP_598547 Q8CG47 SMC_N
SMC_hinge

Related Sequences

 
mRNAGenPeptSwissProt
BC005507 AAH05507 Q8CG47
BC061481 AAH61481 Q6P7V9
BC062939 AAH62939 Q8CG47
AK088350 BAC40297 Q8CG47
AK088846 BAC40608 Q8CG47
AK133817 BAE21860 Q3UZJ7
AK141703 BAE24807 Q3UR81
AK152804 BAE31509 Q3U763
AJ534940 CAD59183 Q8CG47

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Smc4 NP_598547 R.norvegicus Smc4 295107   NP_001032262 95
H.sapiens SMC4 10051 Gene Info NP_001002800 90
A.gambiae AgaP_AGAP007826 1278132   XP_317674 46
A.thaliana SMC3 834917   NP_001190492 44
D.melanogaster glu 35001   NP_723996 41
N.crassa NCU09063 3874714   XP_958567 40
S.cerevisiae SMC4 850775   NP_013187 38
S.pombe cut3 2539817   NP_595392 37
P.falciparum PFE0450w 812851   XP_001351649 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)