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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Timp2, tissue inhibitor of metalloproteinase 2
Sequence ID:NM_011594
Entrez Gene ID:21858
Ensembl ID:ENSMUSG00000017466

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 E2|11 72.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 118301064 - 118355323

NM_011594 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
142849118162374118165209
28502974118171889118172013
29753083118178732118178840
30843184118181422118181522
31853635118216274118216724

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6821553Full LengthBC049126tissue inhibitor of metalloproteinase 2
4946639IncompleteBC037235tissue inhibitor of metalloproteinase 2
4946662IncompleteBC029809tissue inhibitor of metalloproteinase 2
4946663IncompleteBC034375tissue inhibitor of metalloproteinase 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035724  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011594 NP_035724 Q6PI17 TIMP

Related Sequences

 
mRNAGenPeptSwissProt
M82858 AAA40445 P25785
M93954 AAA40446 P25785
BC049126 AAH49126 Q6PI17
AY622854 AAT46409 Q6GXA8
AK032818 BAC28038 Q8BSJ3
X62622 CAA44491 P25785

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Timp2 NP_035724 R.norvegicus Timp2 29543   NP_068824 100
H.sapiens TIMP2 7077 Gene Info NP_003246 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta