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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Mm. Sec16a, SEC16 homolog A (S. cerevisiae)
Sequence ID:NM_153125
Entrez Gene ID:227648
Ensembl ID:ENSMUSG00000026924

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2 A3|2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 26432998 - 26434320

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3495273IncompleteBC042603SEC16 homolog A (S. cerevisiae)
5066362IncompleteBC026689SEC16 homolog A (S. cerevisiae)
5360092IncompleteBC034649SEC16 homolog A (S. cerevisiae)
6821888IncompleteBC059898expressed sequence AU024582

Protein Infomation

NM_153125 NP_694765 Q8K000  

Related Sequences

BC026689 AAH26689 Q8R336
BC034649 AAH34649 Q8K000
BC042603 AAH42603 Q811L5
AK122242 BAC65524 Q80U43
AK157671 BAE34147 Q3TZR0
AK162931 BAE37122 Q3TRA8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
M.musculus Sec16a NP_694765 R.norvegicus LOC100360302 100360302   XP_002729192 92
H.sapiens SEC16A 9919 Gene Info NP_055681 72

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)