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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Spna2, spectrin alpha 2
Sequence ID:NM_001076554
NM_001177667
NM_001177668
Entrez Gene ID:20740
Ensembl ID:ENSMUSG00000057738

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2 B|2 18.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 30020423 - 30031448

 Exon Info From UCSC:
NM_001076554
NM_001177667
NM_001177668

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9007321Full LengthBC158015spectrin alpha 2
9054381Full LengthBC172095spectrin alpha 2
9087852Full LengthBC150941spectrin alpha 2
5067542IncompleteBC022120spectrin alpha 2
5353935IncompleteBC027791spectrin alpha 2
5363376IncompleteBC091776spectrin alpha 2
5370493IncompleteBC060504spectrin alpha 2
6306838IncompleteBC049351spectrin alpha 2

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001076554 NP_001070022    
NM_001177667 NP_001171138    
NM_001177668 NP_001171139    

Related Sequences

 
mRNAGenPeptSwissProt
BC027791 AAH27791 P16546
BC060504 AAH60504 Q6PA04
BC091776 AAH91776 Q58ES7
BC150941 AAI50942 B9EKJ1
BC158015 AAI58016 B2RXX6
BC172095 AAI72095 B7ZWK3
AK011566 BAB27703 P16546
AK132224 BAE21044 Q3V1V5
AK141149 BAE24569 Q3URW8
AK158599 BAE34575 Q3TYI8
AK164891 BAE37955 Q3TNY2
X12801 CAA31289 P16546

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Spna2 NP_001171138 R.norvegicus Sptan1 64159   NP_741984 99
H.sapiens SPTAN1 6709 Gene Info NP_001123910 98
A.gambiae AgaP_AGAP006686 1277275   XP_316724 67
D.melanogaster alpha-Spec 38231   NP_476739 66
C.elegans spc-1 180603   NP_508537 60

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta