Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Slc1a3, Solute carrier family 1 (glial high affinity glutamate transporter), member 3
Sequence ID:NM_148938
Entrez Gene ID:20512
Ensembl ID:ENSMUSG00000005360

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:15 A2|15 6.7

Chromosomal Position (from UCSC)

Chromosomal Position:15: 8634668 - 8708808

NM_148938 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11222485841258586338
2225235985890558589189
2360255485921818592375
2555278885928998593132
2789308185956598595951
3082312485995428599584
3125332986008488601052
3330346786382878638424
3468374586585618658838
3746421486603388660806

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6842500Full LengthBC058711solute carrier family 1 (glial high affinity glutamate transporter), member 3
30102325Full LengthBC066154solute carrier family 1 (glial high affinity glutamate transporter), member 3
6467658IncompleteBC055300solute carrier family 1 (glial high affinity glutamate transporter), member 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_683740  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_148938 NP_683740 Q543U3
P56564
SDF

Related Sequences

 
mRNAGenPeptSwissProt
BC058711 AAH58711 Q543U3
P56564
BC066154 AAH66154 Q543U3
P56564
AF330257 AAK01708 Q543U3
P56564
L19565 AAK13573 Q99NG1
AK040798 BAC30705 Q543U3
P56564
AK045949 BAC32544 Q543U3
P56564
AK049090 BAC33538 Q8C7W8
AK082736 BAC38592 Q543U3
P56564
AK084968 BAC39324 Q8C3T7
AK158777 BAE34658 Q543U3
P56564

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Slc1a3 NP_683740 R.norvegicus Slc1a3 29483   NP_062098 99
H.sapiens SLC1A3 6507 Gene Info NP_004163 97
C.elegans glt-5 174530   NP_496094 51
A.gambiae AgaP_AGAP009443 1269241   XP_560420 49
D.melanogaster Eaat1 34251   NP_001188751 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)