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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cdx2, caudal type homeobox 2
Sequence ID:NM_007673
Entrez Gene ID:12591
Ensembl ID:ENSMUSG00000029646

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5 G2-G3|5 82.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:5: 147300883 - 147302068

NM_007673 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11194148112475148113668
11951340148114756148114901
13412145148118020148118824

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40039012Full LengthBC103516caudal type homeo box 2
40039015Full LengthBC103517caudal type homeo box 2
40039017Full LengthBC103520caudal type homeo box 2
40039019Full LengthBC103519caudal type homeo box 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031699  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007673 NP_031699 Q543L9
P43241
Homeobox
Caudal_act

Related Sequences

 
mRNAGenPeptSwissProt
S74520 AAB32251 P43241
BC103516 AAI03517 Q543L9
P43241
BC103517 AAI03518 Q543L9
P43241
BC103519 AAI03520 Q543L9
P43241
BC103520 AAI03521 Q543L9
P43241
AK049566 BAC33814 Q543L9
P43241
AK049574 BAC33820 Q8BQI5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cdx2 NP_031699 R.norvegicus Cdx2 66019   NP_076453 96
H.sapiens CDX2 1045 Gene Info NP_001256 94
D.melanogaster cad 35341   NP_599128 49
A.gambiae AgaP_AGAP009646 1279024   XP_318681 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)