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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Apex1, Apurinic/apyrimidinic endonuclease 1
Sequence ID:NM_009687
Entrez Gene ID:11792
Ensembl ID:ENSMUSG00000035960

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:14 C3|14 18.5

Chromosomal Position (from UCSC)

Chromosomal Position:14: 50924980 - 50927136

NM_009687 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
195154469551544703
101215154488751544998
1223095154519151545378
3105025154583551546027
50311855154613051546812

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5715485Full LengthBC052401apurinic/apyrimidinic endonuclease 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033817  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_009687 NP_033817 P28352
Q544Z7
EC 4.2.99.18 Exo_endo_phos

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC052401 AAH52401 P28352
Q544Z7
EC 4.2.99.18
D90374 BAA14382 P28352
Q544Z7
EC 4.2.99.18
AK013296 BAB28774 P28352
Q544Z7
EC 4.2.99.18

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Apex1 NP_033817 R.norvegicus Apex1 79116   NP_077062 98
H.sapiens APEX1 328 Gene Info NP_001632 95
A.gambiae AgaP_AGAP009587 1278924   XP_318609 54
D.melanogaster Rrp1 33500   NP_476841 53
A.thaliana ARP 818744   NP_181677 47
C.elegans exo-3 173069   NP_001021584 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta