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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Mm. Hdac1, histone deacetylase 1
Sequence ID:NM_008228
Entrez Gene ID:433759
Ensembl ID:ENSMUSG00000028800

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4 D2.2|4 59.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:4: 129516105 - 129542632

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4217199Full LengthBC092070histone deacetylase 1
4976514Full LengthBC108371histone deacetylase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032254  

Protein Infomation

NM_008228 NP_032254 O09106
EC Hist_deacetyl

Related Sequences

U80780 AAB68398 O09106 EC
BC092070 AAH92070 O09106
BC108371 AAI08372 O09106
X98207 CAA66870 O09106

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
M.musculus Hdac1 NP_032254 R.norvegicus Hdac1 297893   NP_001020580 100
H.sapiens HDAC1 3065 Gene Info NP_004955 99
A.gambiae AgaP_AGAP006511 1277106   XP_316539 79
D.melanogaster Rpd3 38565   NP_647918 77
C.elegans hda-1 179959   NP_506599 65
S.cerevisiae RPD3 855386   NP_014069 64
N.crassa NCU00824 3880510   XP_964367 63
S.pombe clr6 2540368   NP_595333 63
A.thaliana HDA9 823594   NP_190054 61

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)