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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Smn1, survival motor neuron 1
Sequence ID:NM_001252629
NM_011420
Entrez Gene ID:20595
Ensembl ID:ENSMUSG00000021645

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:13 D1/D2.1|13 54.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:13: 100124885 - 100127142

Transcript StartTranscript EndChromosomal Start Chromosomal End
1111100894809100894919
112183100896541100896612
184303100896824100896943
304504100897759100897959
505651100898169100898315
652747100901034100901129
748858100902310100902420
859909100905643100905693
9101227100907335100907652

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6486685Full LengthBC045158survival motor neuron 1
2811088IncompleteBC037436survival motor neuron 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035550  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001252629 NP_001239558    
NM_011420 NP_035550 P97801
Q549F9
SMN

Related Sequences

 
mRNAGenPeptSwissProt
U63294 AAC53057 P97801
Q549F9
U77714 AAC53144 P97801
Q549F9
BC045158 AAH45158 P97801
Q549F9
AY821785 AAV84005 Q5PXT5
AY821786 AAV84006 Q5PXT4
AY821787 AAV84007 Q5PXT3
AK144778 BAE26061 Q3UMN7
AK167832 BAE39854 P97801
Q549F9
Y12835 CAA73356 P97801
Q549F9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Smn1 NP_035550 R.norvegicus Smn1 64301   NP_071954 95
H.sapiens SMN2 6607 Gene Info NP_059107 83
H.sapiens SMN1 6606 Gene Info NP_000335 83

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)