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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Hnf4a, hepatic nuclear factor 4, alpha
Sequence ID:NM_008261
Entrez Gene ID:15378
Ensembl ID:ENSMUSG00000017950

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 H3|2 94.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 163506847 - 163552635

NM_008261 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1232163372923163373154
233407163377312163377486
408502163378295163378389
503609163383920163384026
610765163384690163384845
766853163388254163388341
8541009163389889163390044
10101246163391856163392092
12471399163394622163394774
14004358163395684163398642

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4238842Full LengthBC039220hepatic nuclear factor 4, alpha
4990763IncompleteBC024551hepatic nuclear factor 4, alpha

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032287  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008261 NP_032287 P49698 Hormone_recep
zf-C4

Related Sequences

 
mRNAGenPeptSwissProt
AF015275 AAC02906 O54845
BC039220 AAH39220 P49698
EF193391 ABM69089 A2ICG8
EF193393 ABM69091 P49698
FJ608819 ACM50919 B9VVT5
FJ608820 ACM50920 B9VVT6
FJ608821 ACM50921 B9VVT7
D29015 BAA06101 P49698
AK143948 BAE25624 P49698

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Hnf4a NP_032287 R.norvegicus Hnf4a 25735   NP_071516 100
H.sapiens HNF4A 3172 Gene Info NP_000448 96
C.elegans nhr-69 172840   NP_492615 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)