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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Col11a2, collagen, type XI, alpha 2
Sequence ID:NM_009926
Entrez Gene ID:12815
Ensembl ID:ENSMUSG00000024330

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 B1|17 18.51 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 34048279 - 34059952

 Exon Info From UCSC:
NM_009926

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100014456BC140439collagen, type XI, alpha 2

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009926 NP_034056    

Related Sequences

 
mRNAGenPeptSwissProt
U16789 AAA67751 Q64739
BC140439 AAI40440  
D38412 BAA18910 Q64739
AK138017 BAE23533 Q3UUU1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col11a2 NP_034056 R.norvegicus Col11a2 294279   NP_997693 98
H.sapiens COL11A2 1302 Gene Info NP_542411 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)