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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Scamp1, secretory carrier membrane protein 1
Sequence ID:NM_029153
Entrez Gene ID:107767
Ensembl ID:ENSMUSG00000021687

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:13 D1|13

Chromosomal Position (from UCSC)

Chromosomal Position:13: 94224925 - 94226025

NM_029153 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1827489497138794974117
274928669497809094978207
286729689498053194980632
296931289499484994995008
312932579499966894999796
325833669500202695002134
336734659500303695003134
346635439502294795023024
354436059505517495055235

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4162134Full LengthBC034283secretory carrier membrane protein 1
3487695IncompleteBC002185secretory carrier membrane protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_083429  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_029153 NP_083429 Q8K021
Q3TD71
SCAMP

Related Sequences

 
mRNAGenPeptSwissProt
BC002185 AAH02185 Q99LX1
BC034283 AAH34283 Q8K021
Q3TD71
AK015706 BAB29940 Q9D577
AK132867 BAE21397 Q3TSA8
AK135058 BAE22402 Q3UY11
AK162168 BAE36767 Q3TSA8
AK170343 BAE41733 Q8K021
Q3TD71

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Scamp1 NP_083429 R.norvegicus Scamp1 29521   NP_001094106 100
H.sapiens SCAMP1 9522 Gene Info NP_004857 98
D.melanogaster Scamp 32470   NP_573023 48
A.gambiae AgaP_AGAP002922 1273042   XP_311983 45
C.elegans scm-1 171756   NP_490911 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)