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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Spna1, spectrin alpha 1
Sequence ID:NM_011465
Entrez Gene ID:20739
Ensembl ID:ENSMUSG00000026532

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1 H3|1 95.4 cM

Chromosomal Position (from UCSC)

Chromosomal Position:1: 174172867 - 174248067

 Exon Info From UCSC:
NM_011465

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9087658Full LengthBC150747spectrin alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035595  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011465 NP_035595 P08032 SH3_1
efhand
Spectrin
SH3_2

Related Sequences

 
mRNAGenPeptSwissProt
M10276 AAA40123 P08032
U87455 AAB47540 P08032
AF093576 AAC61874 P08032
BC150747 AAI50748 P08032
AK086017 BAC39592 Q8C3F9
AK142860 BAE25214 Q3UQ30

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Spna1 NP_035595 R.norvegicus Spta1 289257   NP_001011908 95
H.sapiens SPTA1 6708 Gene Info NP_003117 81

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)