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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sgsm1, small G protein signaling modulator 1
Sequence ID:NM_001162965
NM_001254731
NM_172718
NR_027934
NR_027936
Entrez Gene ID:52850
Ensembl ID:ENSMUSG00000042216

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5 F|5 61.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:5: 113265678 - 113310739

 Exon Info From UCSC:
NM_001162965
NM_172718

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8861068Full LengthBC138049small G protein signaling modulator 1
8861069Full LengthBC138050small G protein signaling modulator 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_766306  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001162965 NP_001156437    
NM_001254731 NP_001241660    
NM_172718 NP_766306 Q8BPQ7 TBC
RUN

Related Sequences

 
mRNAGenPeptSwissProt
BC138049 AAI38050 B2RQR5
BC138050 AAI38051 B2RQR5
AK053555 BAC35428 Q8BPQ7
AK167632 BAE39683 Q8BPQ7
AK170021 BAE41515 Q3TDT4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sgsm1 NP_766306 R.norvegicus Sgsm1 288743   NP_001099407 99
H.sapiens SGSM1 129049 Gene Info NP_001091967 94
A.gambiae AgaP_AGAP003198 1273870   XP_312896 54
D.melanogaster CG1695 33046   NP_728346 53
D.melanogaster CG32506 318059   NP_608395 52
C.elegans tbc-8 176454   NP_499292 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)