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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Prg3, proteoglycan 3
Sequence ID:NM_016914
Entrez Gene ID:53856
Ensembl ID:ENSMUSG00000027072

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 D|2 50.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 84988214 - 84993886

NM_016914 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1878482837184828457
882218482881584828948
2225298482938184829688
5306618483155884831689
6627708483314084833248
7719498483386484834042

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40050227Full LengthBC104388proteoglycan 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_058610  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016914 NP_058610 Q9JL95 Lectin_C

Related Sequences

 
mRNAGenPeptSwissProt
AF202533 AAF26366 Q9JL95
BC104388 AAI04389 Q9JL95
BC104389 AAI04390 Q9JL95
AK158110 BAE34360 Q9JL95

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Prg3 NP_058610 R.norvegicus Prg3 295706   NP_001099957 81
H.sapiens PRG3 10394 Gene Info NP_006084 63

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)