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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Whsc1, Wolf-Hirschhorn syndrome candidate 1 (human)
Sequence ID:NM_001081102
NM_001177884
NM_175231
Entrez Gene ID:107823
Ensembl ID:ENSMUSG00000057406

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    brain, cerebellum, cerebrum, embryonic tissue, endocrine, eye, fetus, heart, lung, lymph node, lymphoreticular, mammary gland, nervous, pituitary gland, pooled tissue, retina, skin, stem cell, testis, thymus, uncharacterized tissue, vascular
  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5 B1|5

Chromosomal Position (from UCSC)

Chromosomal Position:5: 33873837 - 33876342

 Exon Info From UCSC:
NM_001081102
NM_001177884
NM_175231

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100063634Full LengthBC156967Wolf-Hirschhorn syndrome candidate 1 (human)
4952692IncompleteBC046473Wolf-Hirschhorn syndrome candidate 1 (human)
6513160IncompleteBC053454Wolf-Hirschhorn syndrome candidate 1 (human)
30356300IncompleteBC079668Wolf-Hirschhorn syndrome candidate 1 (human)
100062453BC156160Wolf-Hirschhorn syndrome candidate 1 (human)

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001081102 NP_001074571      
NM_001177884 NP_001171355      
NM_175231 NP_780440 Q8BVE8 EC 2.1.1.43  

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC046473 AAH46473 Q8BVE8 EC 2.1.1.43
BC053454 AAH53454 Q8BVE8 EC 2.1.1.43
BC156160 AAI56161    
BC156967 AAI56968    
BC158094 AAI58095 B2RY48  
AK017992 BAC25538 Q8C1I1  
AK078622 BAC37342 Q8BVE8 EC 2.1.1.43
AK079112 BAC37544 Q8BJU7  
AK129287 BAC98097 Q8BVE8 EC 2.1.1.43

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Whsc1 NP_780440 R.norvegicus Whsc1 680537   XP_001058474 97
H.sapiens WHSC1 7468 Gene Info NP_579890 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)