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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Hdac2, Histone deacetylase 2
Sequence ID:NM_008229
Entrez Gene ID:15182
Ensembl ID:ENSMUSG00000019777

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10 B1|10 26.0

Chromosomal Position (from UCSC)

Chromosomal Position:10: 36974751 - 37001559

 Exon Info From UCSC:
NM_008229

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8861537Full LengthBC138517histone deacetylase 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032255  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_008229 NP_032255 P70288 EC 3.5.1.98 Hist_deacetyl

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U31758 AAC52889 P70288 EC 3.5.1.98
BC138517 AAI38518 P70288 EC 3.5.1.98
AK051753 BAC34755 Q8BQ10  
AK135572 BAE22585 Q3UXH8  
AK141649 BAE24786 Q3URA2  
AK165734 BAE38360 Q3TMT1  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Hdac2 NP_032255 H.sapiens HDAC2 3066 Gene Info NP_001518 100
R.norvegicus Hdac2 84577   NP_445899 99
C.elegans hda-3 173074   NP_493026 63
A.thaliana HDA6 836431   NP_201116 60

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta