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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Spast, spastin
Sequence ID:NM_001162870
NM_016962
Entrez Gene ID:50850
Ensembl ID:ENSMUSG00000024068

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, pooled tissue, retina, skin, soft tissue, spleen, stem cell, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17|17 E3

Chromosomal Position (from UCSC)

Chromosomal Position:17: 74339364 - 74388484

 Exon Info From UCSC:
NM_001162870
NM_016962

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6441742Full LengthBC046286spastin

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001162870 NP_001156342 Q9QYY8 EC 3.6.4.3  
NM_016962 NP_058658      

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC046286 AAH46286 Q9QYY8 EC 3.6.4.3
AK007793 BAB25259 Q9QYY8 EC 3.6.4.3
AK129282 BAC98092 Q9QYY8 EC 3.6.4.3
AJ246002 CAB60143 Q9QYY8 EC 3.6.4.3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Spast NP_058658 R.norvegicus Spast 362700   NP_001102172 99
H.sapiens SPAST 6683 Gene Info NP_055761 93
D.melanogaster spas 42846   NP_651206 57
A.gambiae SPAST_ANOGA 1273633   XP_312634 56
C.elegans spas-1 179300   NP_741586 49
A.thaliana AT2G45500 819158   NP_182074 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)