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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Hoxa1, homeobox A1
Sequence ID:NM_010449
Entrez Gene ID:15394
Ensembl ID:ENSMUSG00000029844

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6 B3|6 26.28 cM

Chromosomal Position (from UCSC)

Chromosomal Position:6: 52155366 - 52158317

NM_010449 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
117235210536552107087
172424745210756552108315

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8861116Full LengthBC138097homeo box A1
8861117Full LengthBC138098homeo box A1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034579  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_010449 NP_034579 Q8BNI8 Homeobox

Related Sequences

 
mRNAGenPeptSwissProt
M22115 AAA37559 P09022
BC138097 AAI38098 B9EHK7
BC138098 AAI38099 B9EHK8
AK083575 BAC38956 Q8BNI8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Hoxa1 NP_034579 R.norvegicus Hoxa1 25607   NP_037207 96
H.sapiens HOXA1 3198 Gene Info NP_005513 94
C.elegans ceh-13 176069   NP_498655 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)