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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Cpsf4, cleavage and polyadenylation specific factor 4
Sequence ID:NM_178576
Entrez Gene ID:54188
Ensembl ID:ENSMUSG00000029625

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5 G2|5

Chromosomal Position (from UCSC)

Chromosomal Position:5: 145167403 - 145182040

NM_178576 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1236145928092145928327
237287145931383145931433
288440145934175145934327
441534145936979145937072
535607145938098145938170
608700145939704145939796
7011605145942004145942908

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5689404Full LengthBC057067cleavage and polyadenylation specific factor 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_848671  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_178576 NP_848671 Q8BQZ5 zf-CCHC
zf-CCCH

Related Sequences

 
mRNAGenPeptSwissProt
AF033201 AAC53567 Q8BQZ5
BC057067 AAH57067 Q8BQZ5
EU588393 ACC60271 B2LVG5
EU588394 ACC60272 B2LVG6
AK046064 BAC32587 Q8BQZ5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cpsf4 NP_848671 R.norvegicus Cpsf4 304277   NP_001012351 100
H.sapiens CPSF4 10898 Gene Info NP_006684 99
D.melanogaster Clp 33259   NP_477156 63
C.elegans cpsf-4 178151   NP_001023126 54

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)