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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Rad23b, RAD23b homolog (S. cerevisiae)
Sequence ID:NM_009011
Entrez Gene ID:19359
Ensembl ID:ENSMUSG00000028426

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4|4 B3

Chromosomal Position (from UCSC)

Chromosomal Position:4: 55390869 - 55391521

NM_009011 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13865536291355363298
3874685537964855379729
4695485538091655380995
5498175538307555383343
8188735539110555391160
87410015539386055393987
100211375539535155395486
113812655539645855396585
126614575539828155398472
145838115540275555405108

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4459657Full LengthBC027747RAD23b homolog (S. cerevisiae)
6813997Full LengthBC068193RAD23b homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033037  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009011 NP_033037 P54728 ubiquitin
UBA

Related Sequences

 
mRNAGenPeptSwissProt
BC027747 AAH27747 P54728
BC068193 AAH68193 Q6NVC3
AK142280 BAE25006 Q3UQN3
AK150089 BAE29298 P54728
AK157252 BAE34014 Q3U041
AK160880 BAE36067 P54728
AK160890 BAE36071 P54728
AK160973 BAE36124 P54728
AK163379 BAE37326 Q3TQQ6
AK167582 BAE39643 Q3TJ52
X92411 CAA63146 P54728

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rad23b NP_033037 R.norvegicus Rad23b 298012   NP_001020446 97
H.sapiens RAD23B 5887 Gene Info NP_002865 91
N.crassa NCU07542 3875193   XP_959055 49
S.pombe rhp23 2540481   NP_596231 47
A.thaliana RAD23B 844304   NP_001185439 44
A.thaliana RAD23A 838188   NP_173070 44
A.gambiae AgaP_AGAP000733 1272322   XP_311268 43
S.cerevisiae RAD23 856674   NP_010877 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)