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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Map1lc3a, microtubule-associated protein 1 light chain 3 alpha
Sequence ID:NM_025735
NR_046364
Entrez Gene ID:66734
Ensembl ID:ENSMUSG00000027602

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2|2 H2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 155276450 - 155278071

NM_025735 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1203155102179155102381
204259155102693155102748
260366155102833155102939
367965155103210155103808

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3256801Full LengthBC010596microtubule-associated protein 1 light chain 3 alpha

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_080011  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_025735 NP_080011 Q91VR7 MAP1_LC3

Related Sequences

 
mRNAGenPeptSwissProt
BC010596 AAH10596 Q91VR7
AK003122 BAB22582 Q91VR7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Map1lc3a NP_080011 H.sapiens MAP1LC3A 84557 Gene Info NP_115903 100
R.norvegicus Map1lc3a 362245   NP_955794 100
C.elegans lgg-2 177989   NP_502035 60

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)