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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. H2-DMb2, histocompatibility 2, class II, locus Mb2
Sequence ID:NM_010388
Entrez Gene ID:15000
Ensembl ID:ENSMUSG00000037548

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 B1|17 18.57 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 34145312 - 34151553

NM_010388 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1553428236034282414
563373428459534284876
3386223428549534285779
6237393428745034287566
7407753428773434287769
7767863428802934288039

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9053943Full LengthBC145385histocompatibility 2, class II, locus Mb2
9053944Full LengthBC145386histocompatibility 2, class II, locus Mb2
9054246Full LengthBC171960histocompatibility 2, class II, locus Mb2
9055717Full LengthBC141105histocompatibility 2, class II, locus Mb2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034518  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_010388 NP_034518 Q31099 MHC_II_beta
C1-set

Related Sequences

 
mRNAGenPeptSwissProt
U20314 AAA86489 Q31098
U20315 AAA86490 Q7JFR0
U20316 AAA86491 Q31100
U20317 AAA86492 Q31101
U35334 AAA91144 Q31099
U35335 AAA91145 Q31099
U35336 AAA91146 Q31112
U35337 AAA91147 Q31113
U35338 AAA91148 Q31114
BC141105 AAI41106 B7ZNR4
BC145385 AAI45386 B7ZNR3
BC145386 AAI45387 B7ZNR4
BC171960 AAI71960 B7ZNR4
AK154923 BAE32928 Q31099
X90796 CAA62315 P70238
X90797 CAA62316 P70679
X90798 CAA62317 Q95602
X90799 CAA62318 Q95602
X90800 CAA62319 P70239
X90801 CAA62320 P70241
X90802 CAA62321 Q95552
X90803 CAA62322 Q95602
X90804 CAA62323 P70240
X90805 CAA62324 P70679
X90806 CAA62325 Q95602
X90807 CAA62326 Q95602
X90808 CAA62327 Q95602

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus H2-DMb2 NP_034518 M.musculus H2-DMb1 14999 Gene Info NP_034517 93
R.norvegicus RT1-DMb 294273   NP_942035 86
H.sapiens HLA-DMB 3109 Gene Info NP_002109 74

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)