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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Col6a2, collagen, type VI, alpha 2
Sequence ID:NM_146007
Entrez Gene ID:12834
Ensembl ID:ENSMUSG00000020241

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:10 B5-C1|10 41.1 cM

Chromosomal Position (from UCSC)

Chromosomal Position:10: 76611044 - 76623325

 Exon Info From UCSC:
NM_146007

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3594974Full LengthBC034414collagen, type VI, alpha 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_666119  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_146007 NP_666119 Q02788 VWA
Collagen

Related Sequences

 
mRNAGenPeptSwissProt
L06343 AAA37441 Q02788
BC034414 AAH34414 Q02788
AK042826 BAC31374 Q02788
X62332 CAA44206 Q02788
X65582 CAA46541 Q02788
Z18272 CAA79153 Q02788

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col6a2 NP_666119 R.norvegicus Col6a2 361821   NP_001094211 98
H.sapiens COL6A2 1292 Gene Info NP_001840 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)