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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Col27a1, collagen, type XXVII, alpha 1
Sequence ID:NM_025685
Entrez Gene ID:373864
Ensembl ID:ENSMUSG00000045672

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4|4 C1

Chromosomal Position (from UCSC)

Chromosomal Position:4: 63334028 - 63334988

 Exon Info From UCSC:
NM_025685

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4194659IncompleteBC038041procollagen, type XXVII, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_079961  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_025685 NP_079961 Q5QNQ9 Collagen
COLFI
Laminin_G_2

Related Sequences

 
mRNAGenPeptSwissProt
AY167568 AAN87341 Q5QNQ9
AK173283 BAD32561 Q5QNQ9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col27a1 NP_079961 R.norvegicus Col27a1 298101   NP_942042 93
H.sapiens COL27A1 85301 Gene Info NP_116277 82

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)