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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Lst1, leukocyte specific transcript 1
Sequence ID:NM_010734
Entrez Gene ID:16988
Ensembl ID:ENSMUSG00000073412

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 B1|17 19.06 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 35185103 - 35188434

NM_010734 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
32183532203935322254
2192383532352935323548
2393343532389035323985
3354183532530135325384

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6747449Full LengthBC086881leukocyte specific transcript 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034864  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_010734 NP_034864   LST1

Related Sequences

 
mRNAGenPeptSwissProt
M18187 AAA37272 Q9Z1H4
U72643 AAB39345 O09128
U72644 AAB39346 O09129
AF000428 AAB87002 O08843
BC086881 AAH86881 Q5PR18
AK146409 BAE27148 Q3UJK7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Lst1 NP_034864 R.norvegicus Lst1 64569   NP_072156 78

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)