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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Capn2, calpain 2
Sequence ID:NM_009794
Entrez Gene ID:12334
Ensembl ID:ENSMUSG00000026509

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1 H5|1

Chromosomal Position (from UCSC)

Chromosomal Position:1: 182467369 - 182517419

 Exon Info From UCSC:
NM_009794

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5703563Full LengthBC054726calpain 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033924  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_009794 NP_033924 O08529 EC 3.4.22.53 efhand
Peptidase_C2
Calpain_III

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF015038 AAB94029 O08529 EC 3.4.22.53
BC054726 AAH54726 O08529 EC 3.4.22.53
D38117 BAA22964 O08529 EC 3.4.22.53
AK052141 BAC34855 Q8BPV9  
AK150695 BAE29774 Q3U8S5  
AK152094 BAE30942 Q3U8S5  
AK154855 BAE32880 Q3U3A8  
Y10139 CAA71227 O08529 EC 3.4.22.53

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Capn2 NP_033924 R.norvegicus Capn2 29154   NP_058812 98
H.sapiens CAPN2 824 Gene Info NP_001739 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta