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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Alx1, ALX homeobox 1
Sequence ID:NM_172553
Entrez Gene ID:216285
Ensembl ID:ENSMUSG00000036602

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10 D1|10 55.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:10: 103021931 - 103024215

NM_172553 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11662102470480102472141
16631791102484810102484938
17922096102487768102488072
20972493102491014102491410

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6513129Full LengthBC052200ALX homeobox 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_766141  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_172553 NP_766141 Q8C8B0 Homeobox
OAR

Related Sequences

 
mRNAGenPeptSwissProt
BC052200 AAH52200 Q8C8B0
AK047846 BAC33173 Q8C8B0
AK086731 BAC39730 Q8C8B0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Alx1 NP_766141 R.norvegicus Alx1 25401   NP_037053 99
H.sapiens ALX1 8092 Gene Info NP_008913 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)