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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ptma, prothymosin alpha
Sequence ID:NM_008972
Entrez Gene ID:19231
Ensembl ID:ENSMUSG00000026238

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1 D|1

Chromosomal Position (from UCSC)

Chromosomal Position:1: 86530156 - 86530709

NM_008972 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12158842331088423524
2162878842574788425818
2883848842603088426126
3854588842630588426378
45911928842653988427272

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6506450Full LengthBC083135prothymosin alpha
6820943Full LengthBC081453prothymosin alpha
30699339Full LengthBC085171prothymosin alpha

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032998  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008972 NP_032998 P26350 Prothymosin

Related Sequences

 
mRNAGenPeptSwissProt
BC081453 AAH81453 P26350
BC083135 AAH83135 P26350
BC085171 AAH85171 Q0VGU2
AK037980 BAC29913 P26350
AK084218 BAC39141 P26350
AK088005 BAC40090 Q8C2T3
AK132003 BAE20932 P26350
AK142076 BAE24932 P26350
AK143576 BAE25445 Q8C2T3
AK145650 BAE26566 P26350
AK146454 BAE27185 Q8C2T3
AK146651 BAE27331 Q8C2T3
AK146849 BAE27480 Q8C2T3
AK151289 BAE30274 Q3U8X6
AK151511 BAE30461 Q3UA54
AK151768 BAE30674 Q3U6E4
AK152032 BAE30891 Q3U8X6
AK153178 BAE31781 Q3U6E4
AK153496 BAE32043 Q8C2T3
AK153953 BAE32276 P26350
AK159128 BAE34842 Q8C2T3
X56135 CAA39601 P26350

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ptma NP_032998 R.norvegicus RGD1560723 500448   XP_580067 94
H.sapiens LOC100506248 100506248   XP_003118691 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)