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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Txnl1, thioredoxin-like 1
Sequence ID:NM_016792
Entrez Gene ID:53382
Ensembl ID:ENSMUSG00000024583

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:18|18 D3

Chromosomal Position (from UCSC)

Chromosomal Position:18: 63664099 - 63692188

NM_016792 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
115326382245463823985
153316376383123563831339
163818106383370263833874
181118806383509763835166
188120036383653263836654
200421776383900663839179
217822746384186463841960
227525586385172963852012

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6596299Full LengthBC061123thioredoxin-like 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_058072  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016792 NP_058072 Q8CDN6 Thioredoxin
DUF1000

Related Sequences

 
mRNAGenPeptSwissProt
AF052660 AAC40183 Q8CDN6
BC061123 AAH61123 Q8CDN6
AK029807 BAC26626 Q8CDN6
AK144211 BAE25774 Q3UNH3
AK150326 BAE29469 Q8CDN6
AK150887 BAE29934 Q3U8R9
AK150983 BAE30010 Q3UBF4
AK152101 BAE30948 Q3U8R9
AK167954 BAE39954 Q8CDN6
AK168712 BAE40554 Q8CDN6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Txnl1 NP_058072 R.norvegicus Txnl1 140922   NP_543163 99
H.sapiens TXNL1 9352 Gene Info NP_004777 99
A.gambiae AgaP_AGAP005462 1276155   XP_315465 50
D.melanogaster Txl 38646   NP_523938 49
C.elegans Y54E10A.3 171897   NP_491127 46
A.thaliana AT3G04780 819638   NP_566238 45
S.pombe txl1 2541028   NP_595306 41
N.crassa NCU02520 3881849   XP_965651 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)